convert_fasta_labels

Convert IgLabel-style labels in a FASTA file to dummy IUIS format

usage: convert_fasta_labels [-h] [-g GERMLINE_SET] [-s DUMMY_SUBGROUP] [-a DUMMY_ALLELE] [-u] input_file output_file

Positional Arguments

input_file

records to convert (FASTA)

output_file

converted output (FASTA)

Named Arguments

-g, --germline_set

AIRR standard germline set to use for metadata (JSON)

-s, --dummy_subgroup

subgroup to use when no subgroup has been defined

Default: “0”

-a, --dummy_allele

allele to use when no allele has been defined

Default: “00”

-u, --un_dummy

translate dummy names back to label form

Default: False